Compute network component UMAPs and visualize component weights.

Compute network component UMAPs and visualize component weights.

wnn_Components(
  object,
  exp.list,
  dim.lists,
  plt.wnn.umap,
  umap.min.dist = 0.1,
  umap.n.neighbors = 20
)

Arguments

object

wnn integrated seurat object (wnn_Run output)

exp.list

List of expression matrices (wnn_Run list input)

dim.lists

List of PC numbers (wnn_Run output)

plt.wnn.umap

ggplot handle for integrated network umap (wnn_Run output)

umap.min.dist

min.dist for umap embedding. See RunUMAP(). Default: 0.1

umap.n.neighbors

n.neighbor for umap embedding. See RunUMAP(). Default: 20

Value

list of ggplot handle and object

Author

Nicholas Mikolajewicz