Plot variable genes in Seurat Object — variableGenes.Plot • scMiko

Using Seurat's VariableFeaturePlot, variable genes are identified and plotted. Top N variable genes are labeled.

variableGenes.Plot(
  so,
  gNames,
  set_name = NULL,
  top.n.genes = 10,
  pt.colors = c("black", "tomato"),
  ...
)

Arguments

so: Seurat Object
gNames: Named gene list; entries are Symbols, names are Ensemble.
set_name: Character specfiying name of dataset. Optional.
top.n.genes: Numeric. Top n genes to label on plot.
pt.colors: colors to specify non-variable/variable status.
...: additional arguments passed to Seurat::VariableFeaturePlot(...)

Value

ggplot handle