Search Reactome/GO databases for terms that match query

Searches Reactome/GO databases using query stem (i.e., incomplete term) and returns all matches.

searchAnnotations(query, db = NULL, species = NULL, ontology = NULL)

Arguments

query

Query term. A character.

db

Database to search, if specified. One of:

• "Reactome"

• "GO"

species

Character specifying species, if specified. One of:

• "Hs"

• "Mm"

ontology

Character specifying GO ontology to filter terms by. If unspecified, one or more of:

• "BP" - biological processes

• "MF" - molecular functions

• "CC" - cellular compartment

Value

dataframe of terms that match query

Author

Nicholas Mikolajewicz