Annotate glioblastoma (GBM) subtype based on Neftel 2019 scoring pipeline. — scoreGBM • scMiko

Annotate glioblastoma (GBM) subtype based on Neftel 2019 scoring pipeline.

scoreGBM(
  object,
  species = detectSpecies(object),
  verbose = T,
  do.snip = T,
  reduction = "umap"
)

Arguments

object: seurat object
species: Species, either "Mm" or "Hs".
verbose: Print progress. Default is TRUE.
do.snip: truncate scores at 1st and 99th percentiles (protects against outliers). Default is T.
reduction: reduction slot to project scores onto. Default is "umap"

Author

Nicholas Mikolajewicz