Cell-level gene expression projected on UMAP — scExpression.UMAP • scMiko

UMAP plot with cell-level gene expression for queried gene. Uses Seurat::FeaturePlot().

scExpression.UMAP(
  object,
  query.gene,
  x.label = "UMAP 1",
  y.label = "",
  adjust.pt.size = autoPointSize(ncol(object)),
  order.cells = T,
  plot.name = NULL,
  reduction = "umap",
  ...
)

Arguments

object: Seurat Object
query.gene: Character specifying gene name to plot.
x.label: Character specifying X axis label.
y.label: Character specifying Y axis label.
adjust.pt.size: Adjust point size for plotting. Logical.
order.cells: Plot cells in order of expression. Logical.
plot.name: Character specifying plot title.
reduction: Character specifying reduction name. Default is "umap".
...: additional parameters passed to Seurat::FeaturePlot().

Value

ggplot handle