pruneSSN.Rd
Identify and (optionally) prune gene program features in scale-free shared nearest neighbor network (SSN)
pruneSSN(object, graph = "RNA_snn_power", prune.threshold = 0.1, return.df = F)
Seurat object objected from SSN analysis.
name of shared nearest neighbor (SNN) graph used for SSN analysis.
threshold used for pruning features from SSN graph (features with low connectivity are preferentially pruned). Default is 0.1.
whether to return data.frame instead of named list.
Returns named list of SSN gene program features.
runSSN
for SSN analysis