Load CellRanger preprocessed data

Input data is output from cell ranger (10x datasets)

loadCellRanger(import_set, input_organisms, dir = "")

Arguments

import_set

Character specifying folder containing matrix.mtx, genes.tsv (or features.tsv) and barcodes.tsv files provided by 10x.

input_organisms

Character specifying species to include. This is necessary to parse ensemble ids into mouse and human. One of:

• "Hs" - Human

• "Mm" - Mouse

• c("Hs", "Mm") - both species included

dir

Character. folder containing import_set folder.

Value

list containing Seurat Object and named gene vector.