Highlight cells on UMAP plot — highlightUMAP • scMiko

Highlight cells on UMAP plot

highlightUMAP(
  object,
  group = "seurat_clusters",
  reduction = "umap",
  highlight.color = "tomato"
)

Arguments

object: Seurat object.
group: grouping variable in object's meta data.
reduction: reduction used to visualize cells. Default is "umap".
highlight.color: color of highlighted cells. Default is "tomato".

Value

list of ggplot handles

Examples


 plot.highlight <-  highlightUMAP(object = so, group = "seurat_clusters")
#> Error in data.frame(object@reductions[[reduction]]@cell.embeddings): object 'so' not found