Get cells that express query gene

Get cells that express query gene above specified threshold

getExpressingCells(so, query, expression.threshold = 0, which.data = "data")

Arguments

so

Seurat Object

query

Query gene. A character.

expression.threshold

Numeric. Return cells that express query above threshold value. Default is 0.

which.data

Seurat data slot ("data", "scale")

Value

Character vector of cell barcodes/ids

Author

Nicholas Mikolajewicz