Consolidate several NMF reduction objects into single NMF reduction object within Seurat object.

Consolidate several NMF reduction objects into single NMF reduction object within Seurat object.

consolidateNMF(object, reduction_key = "nmf")

Arguments

object

Seurat object containing several NMF reductions (e.g., each NMF with different k parameter)

reduction_key

Reduction key used to identify reduction objects for consolidation. Default is "nmf".

Value

Seurat object with with several NMF reductions consolidated into "nmf_all" reduction object.

References

https://nmikolajewicz.github.io/scMiko/articles/Module_Detection.html

See also

runNMF

Author

Nicholas Mikolajewicz