Filter seurat object by specified cluster ids — clusterFilter • scMiko

Filter seurat object by specified cluster ids

clusterFilter(so, include = NULL, omit = NULL, which.field = "seurat_clusters")

Arguments

so: Seurat Object
include: Cluster ids to include. Optional, NULL if unspecified.
omit: Cluster ids to omit. Optional, NULL if unspecified.
which.field: Metadata field to filter by. Default is 'seurat_clusters'

Value

Seurat Object

Author

Nicholas Mikolajewicz

Examples


# specify filtering parameters
filter.parameters <- list(
     include = NULL,
     omit = c(8,9)
     )

# filter seurat
so.filtered <- clusterFilter(so, include = filter.parameters$include, omit = filter.parameters$omit)
#> Warning: restarting interrupted promise evaluation
#> Error in clusterFilter(so, include = filter.parameters$include, omit = filter.parameters$omit): object 'so' not found